| 期刊論文1. | Frijters, R.、van Vugt, M.、Smeets, R.、van Schaik, R.、de Vlieg, J.、Alkema, W.(2010)。Literature mining for the discovery of hidden connections between drugs, genes and diseases。PLoS Computational Biology,6(9)。 | 2. | Domedel-Puig, N.、Wernisch, L.(2005)。Applying GIFT, a Gene Interactions Finder in Text, to fly literature。Bioinformatics,3582-3583。 | 3. | Boyack, K. W.、Newman, D.、Duhon, R. J.、Klavans, R.、Patek, M.、Biberstine, J. R.(2011)。Clustering More than Two Million Biomedical Publications: Comparing the Accuracies of Nine Text-Based Similarity Approaches。PLoS ONE,6(3),e18029。 | 4. | Liu, R. L.、Shih, C. C.(2014)。Identification of highly related references about gene-disease association。BMC Bioinformatics,15,286。 | 5. | Liu, R. L.、Huang, Y. C.(2011)。Ranker enhancement for proximity-based ranking of biomedical texts。Journal of the American Society for Information Science and Technology,62(12),2479-2495。 | 6. | Kim, J.、So, S.、Lee, H. J.、Park, J. C.、Kim, J. J.、Lee, H.(2013)。DigSee: disease gene search engine with evidence sentences (version cancer)。Nucleic Acids Research,41,W510-W517。 | 7. | Jensen, L. J.、Saric, J.、Bork, P.(2006)。Literature mining for the biologist: from information retrieval to biological discovery。Nature Reviews Genetics,7(2),119-129。 | 8. | Singhal, A.(2001)。Modern information retrieval: A brief overview。IEEE Data Eng Bull,24(4),35-43。 | 9. | Patnala, R.、Clements, J.、Batra, J.(2013)。Candidate gene association studies: a comprehensive guide to useful in silico tools。BMC Genetics,14,39。 | 10. | Özgür, A.、Vu, T.、Erkan, G.、Radev, D. R.(2008)。Identifying gene-disease associations using centrality on a literature mined gene。Bioinformatics,24(13),277-285。 | 11. | Winnenburg, R.、Wächter, T.、Plake, C.、Doms, A.、Schroeder, M.(2008)。Facts from text: can text mining help to scale-up high-quality manual curation of gene products with ontologies?。Briefings in Bioinformatics,9(6),466-478。 | 12. | Tudor, C. O.、Schmidt, C. J.、Vijay-Shanker, K.(2010)。eGIFT: mining gene Information from the literature。BMC bioinformatics,11,418。 | 13. | Tsuruoka, Y.、Tsujii, J.、Ananiadou, S.(2008)。FACTA: a text search engine for finding associated biomedical concepts。Bioinformatics,24(21),2559-2560。 | 14. | Wiegers, Thomas C.、Davis, Allan Peter、Cohen, K. Bretonnel、Hirschman, Lynette、Mattingly, Carolyn J.(2009)。Text mining and manual curation of chemical-gene-disease networks for the Comparative Toxicogenomics Database (CTD)。BMC bioinformatics,10,326。 | 會議論文1. | Baral, C.、Gonzalez, G.、Gitter, A.、Teegarden, C.、Zeigler, A.(2007)。CBioC: Beyond a Prototype for Collaborative Annotation of Molecular Interactions from the Literature。Life Sciences Society Computational Systems Bioinformatics Conference,381-384。 | 2. | Ahmed, S. T.、Chidambaram, D.、Davulcu, H.、Baral, C.(2005)。IntEx: A Syntactic Role Driven Protein-Protein Interaction Extractor for Bio-Medical Text。The ACL-ISMB Workshop on Linking Biological Literature, Ontologies and Databases: Mining Biological Semantics。Detroit, Michigan:Association for Conqmtational Linguistics。54-61。 | 3. | Hirsch, L.、Hirsch, R.、Saeedi, M.(2007)。Evolving Lucene search queries for text classification。The 9th annual conference on Genetic and Evolutionary Computation。London, England:ACM。1604-1611。 | 4. | Roberson, S. E.、Walker, S.、Beaulieu, M.(1998)。Okapi at TREC 7: automatic ad hoc, filtering, VLC and interactive track。The 7th Text Retrieval Conference,253-264。 | 5. | Zhao, J.、Yun, Y.(2009)。A proximity language model for Information retrieval。The 32nd international ACM SIGIR conference on Research and development in information retrieval。ACM。291-298。 | 圖書1. | McCandless, Michael、Hatcher, Erik、Gospodnetić, Otis(2010)。Lucene in Action。 | |