With regard to the aspect of philosophy, Sun Tzu's Military Science was deeply influenced by Taoism. The interaction between two has to be clarified so that process of the theoretical construction can thus completely be manifested. As to the methodology of sciences, though their evolutions are not quite the Same, their theoretical constructions have their own specific routes and items. There fore, this article is based on the thinking procedure of the deductive logic to analyze the theoretical construction of La Tzu and Sun Tzu, and thus to present their philosophical system including noumenon cognition, thinking logic, system construction, cognitive methods, descriptive process, political application, military application, as well as to study the measures and meanings of their mutual unity, and to further overhaul the value and position of these theories in the cultural development. Only through the process, will the fact that the regularity of philosophical construction is the foundation of unity be manifested. By this, philosophy can continue its course; theories as well as knowledge can expand; various human cultures are able to be integrated; in the end the human civilization can indeed reach the perfection of communication, cooperation, and peace.