Since Neihu line is an extension of Muzha line, the design of the E&M system for Neihu line shall be integrated with the E&M system of Muzha line. The basic design of both systems has similarities in terms of the E&M system and ECS system, such as the ventilation mode - “push and pull” which is adopted into tunnel ventilation system, station smoke exhaust system, which comply with local fire protection criteria and ECS sub-system designs. In terms of power distribution and allocation of emergency power, Neihu line is the same as Muzha line. Moreover, the design concepts of control signaling integrated into CCMS and appling the up-to-dated noise control standards ect. which has been used in the Xinzhuang and Luzhou lines, are also incorporated into Neihu line, and will be presented in this article. A brief introduction of these systems and the comparisons of the design variations and improvement methods between Neihu and Muzha lines are addressed in this article. Finally, some suggestions and refined feasibility topics of energy saving and carbon-dioxide reduction are raised in this article for future design reference.