Abstract Railway reconstruction can reduce pollution, improve traffic condition, and eliminate accidents. When the railway becomes underground, the vacant land can also provide public space for commercial development or other applications. Therefore, in Taiwan 14 railway reconstruction projects have been undertaken. A railway reconstruction project usually takes a long time to complete and during this period, many activities of high risk may be performed in the vicinity of the reconstruction site. In particular, the invasion of a foreign object into the electrification area may cause train collision which can become a high risk to the project. In general, the appropriate applications of inherent safer-design strategy and risk management techniques such as risk identification, analysis, evaluation, improvement, and feedback can lower the risk level for the site. In this paper, a method for controlling the risk level of a railway reconstruction site is proposed. The Failure Modes and Effects Analysis (FMEA) and Cause-Consequence Analysis (CCA) are used to identify the potential risks. Some creative methods based on an inherent safer-design strategy are used to establish a monitoring program to reduce the risk level. Several examples are given to demonstrate the applications of the proposed method. It has been shown that the use of the proposed method can achieve the risk level 20 to 56 times lower than the original one.