Currently it is still unclear how Taiwan’s Governor visualized the bacteriological studies or their developments, which saw rapid advancement in the late 19th and 20th centuries, and brought significant changes to the world’s medical and epidemic prevention measures. Therefore this article utilized official documents and reports on the developments of central government’s systems, like the “Ministry of Health of Governor’s Research Institution”, “Ministry of Health of Governor’s Central Research Institute” and “the Institute of Tropical Medicine” in order to study how Taiwan’s central government visualized the bacteriological research, especially immunology. This paper concluded that after the establishment of the “Ministry of Health Institute” in Taipei in 1909, the human vaccine research and development began in Taiwan and the manufacturing and selling of vaccines suitable to people in Taiwan began in 1916. After that, the study of immunology grew rapidly in the 1920s, and the “Ministry of Health Institute” was changed to the “Ministry of Health’s Central Research Institute”. In 1939, the institute became the “Institute of Tropical Medicine” which focused on bacterial serum research and the vaccines made in Taiwan were distributed widely to the Japanese Empire. In brief, this paper not only shows that the bacteriology and bacterial serum played an important role in the central research system in Taiwan after 1909, but it also shows that the degree of importance of bacteriology had increased following the demand from the nation.