During the disaster period of Japan’s Catholicism, especially the Edo period, missionaries and adherers came to Macau in succession for safety. Catedral de São Paulo accepted them and also opened theologycourses for them. Japan’s missionary cause was thus preserved. It can be revealed from the settings of the Patron saint that martyrdom is the core of Catedral de São Paulo. Those catholic artists, followers and craftsmen who came to Macau for protection extensively participated in the establishment and decoration of the church, whose appearance was thus inevitably affected by the background tone of the fate of Japan’s religious districts, making the theme of martyrdom more outstanding. The idea of the martyrdom of Catholicism was implied in the carving of the church’s front walls and the inside decorations of painting. Lives and works of Nicolas and his four students embodied Catedral de São Paulo’s cultural integration of China, Japan and Europe. Their experiences also reflected the twisted and complicated relationship between the church and Japan’s religious areas.