This research focuses on the investigation of current operation in local government sectors while enforcing natural disaster prevention and mitigation. Take Taipei city, Taipei county, Chia-Yi city and Chia-Yi county as examples of an empirical study. Data collection includes capability of command system, capability of command officer, human resource of disaster preparedness, organization operation plan, mutual supporting system, disaster prevention plan, communication system, supply system and team order. Investigation of this research helps analyze several factors, show that the difference relationship between groups and select predicative variables. Results demonstrate that the relationship between variables and the significant factors affecting the capability of command system. Results not only enhance the functions of local governmental disaster prevention and mitigation toward the right direction but also develop the predicative model for command system capability in a disaster. Several functions and findings of this work are also illustrated.