Whenever a transnational criminal case occurs, the jurisdiction of the case would be the very first issue that one has to establish; in other words, it is necessary to clarify to whichever country the jurisdiction would go. Once the jurisdiction has been confirmed, the country with the jurisdiction can then carry out prosecution and trial towards the inflictor. Especially, if the inflictor is found located beyond the territory of country with jurisdiction, the possibility of requesting for extradition can have incurred. Furthermore, if evidence and document needed for the prosecution or trial are also found located beyond the territory of country with jurisdiction, it is most likely that the issue of mutual assistance in criminal matters can have incurred. This article has resorted to the case of our national vessel Fu Ming Vessel (also titled as Maersk Dubai Vessel) in 1996 as the example for discussion. Cheng Xiu, captain of Taiwan nationality, abandoned two Romanian stowaways from the vessel when it was sailing through the high-sea of Morocco on 11st March 1996, resulting in the uncertainty of life and death to these two stowaways. When Fu Ming Vessel anchored at Halifax of Canada in May, a total of 7 crew members of Taiwan nationality on board, including the captain, were arrested and detained by Canadian police as of request by the prosecutor general of Romania. As a result, it has led to the controversy regarding the jurisdiction that involves Taiwan, Romania, and Canada. This article intends to carry out discussions in separation of man and boat, and would base on international convention, cases of legislation from various countries, and international practice to investigate diverse theories and practices with regard to transnational jurisdiction to identify which country has the jurisdiction for this case. Then, it would further conduct study to extradition system so as to establish the feasibility of country with jurisdiction making request of extradition for inflictor. At the end, the study would resort to the gas-barrel, wood-plant, and rope and other items on the simple raft stowaway ride as evidences of the criminal case for substantiating crime. In such a way, it can resort to the measure of international mutual assistance in criminal matters as it appeals to the detaining country of evidence for return so as to facilitate the procedure of criminal prosecution and trial within the country of jurisdiction.