For many years, Scholars criticized and corrected Hu Shi's conception of science method. They claimed that there are three problems in Hu's statement: First, the way Hu proved his conception is excessively single; Secondly, Hu put too much attention to external reasons of an issue; Third, Hu was unable to conceptualize a metaphysical and systemic scientific methodology. However, they discussed Hu' science method with Hu's statement only, yet ignored the notes Hu applied his conception to a real case, which is his study on Shuijing zhu. This article tried to figure out how Hu Shi study on a case that Dai Zhen was accused that he plagiarized Zhao Yi Qing's commentary on Shuijin zhu. Hu's application showed how he apply his conception of science method to a humanity research case by studying on commentary on Shuijin Zhu in 17-18 century and the organization of si ku guan (四庫館). In this way, we might be able to reconsider Hu Shi's Conception of Science Method