This study is consisted of the exploration on the eco-engineering index based on the influence factors such as the function, the ecology, the economy and the environment of the application of eco-engineering. The “Modified Delphi Method” was used to design the questionnaire and establish the integral evaluation principle of ecological engineering method structure. Based on this questionnaire, the integral evaluation index of ecological engineering methods structure was calculated by processionals & scholars investigating and explore the viability of integral evaluation index. Finally, using “Analytic Hierarchy Process” to calculate the weight of counsel and evaluation for the basis of designing the structure. According to the result of integral evaluation index, staking and wattling gives the highest score in the 15 structures; in the revetment, wooden pile revetment is evaluated in first place. Then, rockery revetment is second and stake and infill roll revetment is third place. Based on the correlation coefficients, although the functional index of this study is still not completed yet, the others are applicable. In the priority sequence of important factor in evaluation principles, although each field is different, it is almost the same with all samples. The index including “safety”, “suitability”, “stability”, “offering biological environment”, “the environment damage under construction” and “the environment influence of structure” are the top 10 in each field. That mean all scholars have almost the same common consensus for these index.