United Nations Declaration on the Rights of Indigenous Peoples, adopted by General Assembly Resolution 61/295 on 13 September 2007, declared that indigenous peoples have the right to the lands, territories and resources which they have traditionally owned, occupied or otherwise used or acquired. “The Indigenous Peoples Basic Law” was announced on 5 February 2005 in Taiwan. Although the law stipulates that the government recognizes the indigenous peoples’ rights to land and natural resources, the society and the community still don’t have a consensus on it and may be lack of understanding of it.In order to understand the history and changes of relevant laws of indigenous peoples, this article will introduce and criticize relevant laws of indigenous peoples as an overall chronological presentation. Then a review of land use laws and administrative procedures is made to see whether the spirit of “ The Indigenous Peoples Basic Law” is in implementation. At last, the author will introduce” the Taidong Beautiful Bay litigation” and “the Smangus Cas” as case studies of the object. Starting with these two field observations, the author will examine whether the self-determination rights of indigenous peoples is implemented in current administrative and judicial practices, and to study whether the indigenous peoples’ rights to land and natural resources are fully protected.