The island of Taiwan lies in a complex tectonic area where was mainly surrounded by the ocean. There was not only enriched with ecological resources but there were many special building styles in the different Taiwanese aboriginal villages. Because of the multi-aboriginal cultures were affected by the traditional beliefs, increasingly western values, economic influences, historical and ancestry origin of the majority of current residents. The cultures of Taiwanese aboriginal building are worth exploring as follow. First of all, the methods of literature analyses, semi-structure interview and non-participate observation were applied in this research. The collected building characteristic data were opening coded by method of Atlas.ti and screened by data analyses of 5W1H. Secondly, the traditional, leisurely and modern aboriginal building cultures respectively could be analyzed by interpretive structure model (ISM). Finally, the sequencings of Taiwanese aboriginal building criteria could be analyzed by AHP. Research found those buildings of basic criteria of innovation story, advanced criteria of special landscape, and final criteria of inherited and functional criteria could be recommended who will be concerned.