The Japanese government recognized the Ainu as "an indigenous people with a distinct language, religion and culture" in 2008. This official recognition was a turning point in Japan's indigenous policy. However, since there is no indigenous representative agency in Japan, its Ainu policies are decided through a series of advisory, or policy promotion councils. That is, although bureaucrats and politicians still play an important role in the decision-making process, most decisions are made through expert councils/panels. Given such a clear distinction, this article attempts to analyze Japan's indigenous policy through Ainu-related councils. It argues that expert-based councils under the Office of Cabinet Secretariat have shaped its current policy. Therefore, looking into Japan's advisory council system is the only way to reach a fuller understanding of its system. In so doing, this article further aims to clarify its limits and possibilities. Hopefully, Japan’s experience can be learned and used in other indigenous contexts.