This study applied two-stage Data Envelopment Analysis to assess the performance of Taiwan's professional baseball teams in the period of 2004 and 2005. Firstly, we executed one-stage DEA. Then, the intermediate outputs were added up to execute two-stage DEA. By using the intermediate outputs, productive efficiency and management efficiency scores were obtained respectively. Besides CCR and BCC models, Window Analysis, Malmquist Index and Cross Efficiency Method (CEM) were also applied within this study. The empirical outcomes implied that the scale inefficiency and technical retrogress were common issues that six professional baseball teams faced. To improve their efficiencies and productivities, it was necessary to adopt certain appropriate management strategies.