Taiwan’s Ministry of Education (MOE) provided 50 billion budget subsidies from 2005 to 2009 for “Developing International Top Universities and Research Centers Project” and preformed “Encouraging University Teaching Excellence Project” budget subsidies from 2005 to encourage diverse development in universities. The purposes of these projects are developing the top universities and promoting the teaching quality. These budget subsidies also provide important information to students’ universities choice. In this study examines whether these budget subsidies have positive signal effect in students’ universities choice. The empirical results show that the “Developing International Top Universities and Research Centers Project” and “Encouraging University Teaching Excellence Project” funds can promote to the rank of school and provide positive signal effect in student university choice. The findings of this study can assist MOE to evaluate the performance of related budget subsidies policies, and also provide understanding what important factors in students’ universities decision for universities recruiting strategy.